2015

• Ponti A., Sevilla Sanchez D., Ehrenfeuchter N., Belyaev Y. Deconvolution of Very Large Data Sets. G.I.T. Imaging & Microscopy 2:22 - 24. 2015.
• Welling M., Ponti A. and Pantazis P. Symmetry breaking in the early mammalian embryo: the case for quantitative single-cell imaging analysis. Mol. Hum. Reprod. 0(0):. 2015.
• Dempsey W. P., Hodas N. O., Ponti A. and Pantazis P. Determination of the source of SHG verniers in zebrafish skeletal muscle. Scientific Reports 5:18119. 2015.

2010

• Meister P., Towbin B. D., Pike B. L., Ponti A. and Gasser S. M. The spatial dynamics of tissue-specific promoters during C. elegans development. Genes & Dev. 24(8):766-782. 2010.
• Siegmann T., Gelman L., Ponti A., Genoud C., van Eeden S., Schwarb P., Flanders D., Rietdorf J. Enhancing the Efficiency of Resource Use - A Project Management System for Multi-user Technical Platforms. Imaging & Microscopy 12(3):44 - 45. 2010.

2009

• Emmenlauer M., Ronneberger O., Ponti A., Schwarb P., Griffa A., Filippi A., Nitschke R., Driever W., Burkhardt H. XuvTools: Free, Fast and Reliable Stitching of Large 3D Datasets. Journal of microscopy 233(1):42-60. 2009.

2008

• Terranova R., Yokobayashi S., Stadler M. B., Otte A. P., van Lohuizen M., Orkin S. H. and Peters A.H.F.M. Polycomb Group Proteins Ezh2 and Rnf2 Direct Genomic Contraction and Imprinted Repression in Early Mouse Embryos. Developmental Cell 15(5):668-679. 2008.
  Ponti A. Approximation of a confocal, diffraction-limited spot of known lateral diameter by a 3D Gaussian (in supplementary data).

2007

• Ponti A., Gulati A., Bäcker V. and Schwarb P. Huygens Remote Manager: a Web Interface for High-Volume Batch Deconvolution. Imaging & Microscopy 9(2):57-58. 2007. (Download unabridged version)
• Meister P., Taddei A., Ponti A., Baldacci G., and Gasser S. M. Replication foci dynamics: replication patterns are modulated by S-phase checkpoint kinases in fission yeast. The EMBO Journal 26(5):1315:1326. 2007.

2005

• Gupton S. L., Anderson K. L., Kole T. P., Fischer R. S., Ponti A., Hitchcock-DeGregori S. E., Danuser G., Fowler V. M., Wirtz D., Hanein D., and Waterman-Storer C. M. Cell migration without a lamellipodium: translation of actin dynamics into cell movement mediated by tropomyosin. JCB 168(4):619-631. 2005.
• Ponti A., Matov A., Adams M., Gupton S., Waterman-Storer C. M., and Danuser G. Periodic Patterns of Actin Turnover in Lamellipodia and Lamellae of Migrating Epithelial Cells Analyzed by Quantitative Fluorescent Speckle Microscopy. Biophys J 89:3456-3469. 2005.

2004

• Ponti A., Machacek M., Gupton S., Waterman-Storer C.M., and Danuser G. Two uncoupled actin networks drive cell protrusion. Science 305:1782-1786. 2004.
• Waterman-Storer C. M., Ponti A., Gupton S. L., Littlefield R., Adams M. and Danuser G. Quantitative Fluorescent Speckle Microscopy of the Actin Cytoskeleton in Migrating Cells. Microscopy and Microanalysis 10:1234-1235. 2004.

2003

• Vallotton P., Ponti A., Waterman-Storer C.M., Salmon E.D., and Danuser G. Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: A Fluorescent Speckle Microscopy study. Biophys J 85:1289-1306. 2003.
• Ponti A., Vallotton P., Salmon W.C., Waterman-Storer C.M. and Danuser G. Computational Analysis of f-Actin Turnover in Cortical Actin Meshworks using Fluorescent Speckle Microscopy. Biophys J 84:3336-3352. 2003.
• [Monograph] Ponti A. High-resolution analysis of F-actin meshwork kinetics and kinematics using computational Fluorescent Speckle Microscopy, . Diss. ETHZ No. 15286. 2003.
  Advisors: G. Danuser, J. Howard, Y. Barral .

2002

• Emmerling M., Dauner M., Ponti A., Fiaux J., Hochuli M., Szyperski T., Wüthrich K., Bailey J. E., Sauer U. Metabolic Flux Responses to Pyruvate Kinase Knockout in Escherichia coli. J Bacteriol 184(1):152-164. 2002.