Disclaimer

This is a work in progress. More will follow soon.

In the meanwhile, take a look at the Introduction to ImarisXT and IceImarisConnector course.

  Installation

Download or clone IceImarisConnector to your computer.

Simple installation

Copy the @IceImarisApplication subfolder to the Imaris XT folder.

In Windows:

C:\Program Files\Bitlane\Imaris 7.x.y\XT\matlab

On Mac OS X:

/Applications/Imaris 7.x.y.app/Contents/SharedSupport/XT/matlab

where 7.x.y represents current Imaris version.

This way, Imaris will find IceImarisConnector when launching XTensions.

 It is recommended to add the Imaris XT folder to the MATLAB path to make it easier to write and debug XTensions from MATLAB.

More flexible installation

Using MATLABStarter, you can keep IceImarisConnector anywhere you like on your file system. This is particularly useful if you want to keep your git repository intact, or if you want to add IceImarisConnector to your existing MATLAB library and make us of external dependences in your XTensions.

IMARISPATH environment variable

IceImarisConnector is clever enough to find Imaris if Imaris itself is installed in the standard locations.

If more than one Imaris installation is found, IceImarisConnector will pick the latest to work with.

In case you want to use an older Imaris version, or you installed Imaris in a non-standard location, you have to tell IceImarisConnector where to find the desired installation. You can do that by setting the environment variable IMARISPATH to point to the Imaris root folder (e.g. C:\Program Files\Bitlane\Imaris 7.5.2).

  Usage

IceImarisConnector can be used in several ways, but for most users the instantiation of an IceImarisConnector object will be the first action in an XT function:

Warning: Undefined array key "KEYWORDS" in /srv/disk1/aarpon/www/scs2.net/next/lib/geshi/geshi.php on line 2020

Fatal error: Uncaught TypeError: array_keys(): Argument #1 ($array) must be of type array, null given in /srv/disk1/aarpon/www/scs2.net/next/lib/geshi/geshi.php:2020 Stack trace: #0 /srv/disk1/aarpon/www/scs2.net/next/lib/geshi/geshi.php(2020): array_keys(NULL) #1 /srv/disk1/aarpon/www/scs2.net/next/lib/geshi/geshi.php(2162): GeSHi->build_parse_cache() #2 /srv/disk1/aarpon/www/scs2.net/next/db/114_c.php(116): GeSHi->parse_code() #3 /srv/disk1/aarpon/www/scs2.net/next/index.php(105): include('/srv/disk1/aarp...') #4 {main} thrown in /srv/disk1/aarpon/www/scs2.net/next/lib/geshi/geshi.php on line 2020